Interactive explorer for 4,659 strain-specific genome-scale metabolic models (GEMs) — 2,313 Escherichia coli (EcopanGEM) and 2,346 Lactobacillaceae across 26 species (LactoPanGEM)
Simulate any of these models in Flux StudioThirteen analyses — flux balance, knockouts, gene essentiality, flux sampling,
strain design — on 12,340 curated growth media. Nothing installs and nothing uploads:
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4,659 genome-scale models across two pangenomes — model size, taxonomic breadth, and where the strains were isolated.
Model size distribution
Two distinct size regimes: compact Lactobacillaceae models vs larger E. coli models.
Lactobacillaceae genomes per species
26 species · the E. coli collection adds 2,313 models as a single species.
Isolation geography
Strains with a recorded isolation country (98% mapped), shaded by number of models. Hover for details · click a country to filter the table below.
0–models per country
0 selected
Columns0 of 0 shown
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How to use: Filter by Dataset (EcopanGEM / LactoPanGEM) or Organism, or search the table.
Click a GEM File to inspect its reactions, metabolites and genes in the browser.
Select rows and use Download Selected GEMs to fetch just those models (packaged client-side, no server), or Download All GEMs for the full archives.
Every model is a COBRApy-compatible JSON.